Scaffold Ga0209645_1027189

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1027189
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F054357	Metagenome	140	Y
F057683	Metagenome	136	N
F092859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10271892	F054357	N/A	MANVAYRRGDIIMHPMSGKAWLHIAEVKFSGHRGYVYECINQKTGKKVTLSAENESIKLVSETRKR
Ga0209645_10271894	F057683	AGGAG	MSIKDNLDRETYGDLMYRLGQMDAILQDLQGTISRFHEESRRIREAQPPHIVRALDEVLQRNAQTQNQHTDDDDVIGRTPAPQETEE
Ga0209645_10271895	F092859	AGGAG	MSDNNTDTVTIIDPDRITINTDNTITISENSEDKDTTVTIPLEFTAKLGVPQELIDEGERALNRFKWTMFALVGGYIALNIYVAYLQVSS
Ga0209645_10271896	F012625	GAG	MDPLHNKTISVGDLVKEHTYSSKGRVGLVHEIISNYYLVVKWLDGSVDKRHRNKYEVTKVIDGEAHPNYLQDYIQGKRW
Ga0209645_10271897	F022314	AGG	MVKTREILKLGDLVRLVRHEPPEDPFHTFPTEEIDRMGVGLVVSIEELNSYKDVPENKWIEYTILWSGLGEQLKHLGFDLIKITGADI