Scaffold Ga0209645_1025946

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1025946
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052941	Metagenome	142	N
F061257	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10259462	F061257	GGAG	MRDMKQINKWKEFFNEVAAACNYWELGFGDINPEMEMEVVRECFVEGWTAAHTCDAWREAVVEEMHDAR
Ga0209645_10259465	F052941	N/A	MMKTYTLYWKNEDTNRVSSKDFTNEAGVDHSAMDKALELAQQADDNMWPWILEEDGCTVAHGWGGDLLGAYRYQG