Scaffold Ga0209645_1022408

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1022408
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2390
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_102240810	F001655	GGAGG	VKQPENDHVKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNII
Ga0209645_102240811	F073499	N/A	MTEQQLEQWLRDNPWKANVIYPAGGIGFMMFVMYTCIQIIDSFLTGSFI
Ga0209645_10224086	F024320	AGGAGG	VTFEEYEQGYYSGDSEDPSGPTEDPETHAMVELLVEFETEMYRLDCRRRLQGLNRRHLESLLVDLHGEEWRDAL
Ga0209645_10224087	F023856	GGAGG	MRCRACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTDDEKYDTLY
Ga0209645_10224089	F002858	AGGAG	MLINEVSIYEVTGGDYSVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLELSLDDRGNVVMTKSTLDKILFIASDELPQAEGDE