Scaffold Ga0209645_1021403

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1021403
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2457
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_102140311	F008925	AGGAG	MTVKSKPKIDAVTLNLINKLKQIDDTINEGAWEYIHLGDILRLQDAFHTAINHYDLKKKGGIEEHGINEGKYTQFWHSDYVCHTDPEAFDPSKVEEEDDE
Ga0209645_10214034	F021207	GGAG	MSKRFKQVNVQHFATLVQEIDVSKYTQEEYREIVEELYMSIFRHNTDGDFVIPTMPNEEGTWKVHKSSATKEEVMKLIKEGRVTWNKDVI
Ga0209645_10214037	F013187	AGGAGG	MPTKAKIKKKPKITWGWIYGDECLELWEHFGFPHPDPDDRMKLKFVKYESKGSYDK