Scaffold Ga0209645_1015638

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1015638
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2960
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019559	Metagenome / Metatranscriptome	229	Y
F025148	Metagenome / Metatranscriptome	203	N
F053650	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10156384	F019559	GAG	MNEEAFNKMMGYPLEAVEQLAERAKEINRKRLIELNNRDLQQNGIEND
Ga0209645_10156386	F053650	N/A	MIRKLLRKKRHMMYVRRFIVELQWDSLNTMLVASATQWNDDIVALLDNNAKLIRKYERRNRWLRF
Ga0209645_10156388	F025148	N/A	MANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASVKQLNDLKILDHVRAKDPQGNFKHEEPVVKIKSINVPKGYLANRQLFDGLIGDGSEIRANVWIKKWEHKGKKGLSIWLSAFVITKLVEYQTNDSDALFEGLEDLGDVTADQVAVPSSKPNVATASASAAFDSDDDLPF