Scaffold Ga0209645_1013150

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1013150
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3279
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057691	Metagenome	136	N
F062260	Metagenome	131	N
F096079	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10131503	F057691	AGGAG	MTPAIREAQDRLQEAKRQLLNAQNDFKVNRGDTFRFRVQAMLMVVKRIEKEVGSRIAWEKWGTGPWPEDGKKV
Ga0209645_10131504	F062260	N/A	MTNLLKHRELIEEFFDKAEELSHLARTIHVLTDEMDFMAMDVLTNMLMTAMVEGDLEALTHVMADFAVRNNKKGKQDAISDLIDATQNQRGVN
Ga0209645_10131508	F096079	N/A	MYESVKFIKLTRVEGFGEIVINLHHIVKMKTRYPETGKGTLVWITKNGNKRGFDQIEVEEDLDLIMQYLSVKNIS