Scaffold Ga0209645_1011675

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1011675
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3511
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035332	Metagenome	172	Y
F036932	Metagenome	169	Y
F092693	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_101167511	F035332	AGGA	MKMTLVVDTDDIKGLEASHKMITTLCGQYDARVDSRGMDKRFGKIAFIKALRSYMKNQMDAVESGDIELKDMRNLRDAKHFADAIWNGWRP
Ga0209645_10116754	F092693	AGGAG	MIIWILSGSYEGEQFASSHLTEKGAVLAAIADVLQLLGVEDKEDAQRVMSNDISGKGLMEGDEPIEWDLCKLREMPRNELWGIFHEWAEYTWDNSQGYSIEVIKTKLAA
Ga0209645_10116757	F036932	GAGG	VRTLKATPAFKVGDFVRVKEGTHQEGIPTSRMGHIRGFANGARRYNDKGVTVEPTDQYKVYMTNGVTLKFHEMFLELVDEEG