Scaffold Ga0209645_1010197

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1010197
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3804
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F068236	Metagenome / Metatranscriptome	125	Y
F091012	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10101971	F045797	N/A	LKMRIIRTVKEDSCIYILEQFADTVISTKWRPYKVGELPNRFGCLDDGSDKGGLYEWFNYKGYTYVRDER
Ga0209645_101019710	F045198	N/A	MKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFDIDYEDIGDISDEDCEAIVTETRWLFSPKQD
Ga0209645_101019714	F091012	N/A	MDNLWKRLKPAVKSKILAEKEEYPYLVKDVKTQLEKHTFWTDLPIGTCRQVVNFSHDSVYDVPLIDFMFGDLFIKKA
Ga0209645_10101972	F068236	AGGA	MSETKGKKFTHDQVIEVGGEYLKCKKSGKWVSESDLEDYEKEMLNIHIQQYYEREQDKYY