Scaffold Ga0209645_1008280

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1008280
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4299
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031530	Metagenome	182	Y
F038272	Metagenome	166	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100828012	F038272	AGGA	MTRNEAKLELFKVNRNIEKMVVAHANELGQWNKNCLMNDLQRLWDRKKTLQNTING
Ga0209645_10082806	F031530	AGGAG	MDFVVYKSEADNHGRLVELVRNEHCEVYEVIVDGIPVFNCTDYSIAEHEYNMECV
Ga0209645_10082807	F079193	AGGA	MKTEAVKTIFKSEDYGLEDHTLTIDKISELDPQGNVMVTKLIAYVIDPLDNAMIFNYSPYAKLGELLNSAKVWIQCGCPSDGDAQGFPRKWTKEALHAWVAG