Scaffold Ga0209645_1007946

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1007946
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4407
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100794613	F051059	AGGAG	MYYALDIYSKATKKMFAYHSSDSRKDILHLKKMYDTNEFVYIKECFGETDEDKENYRQSAKYGDTSVAS
Ga0209645_100794614	F032993	GGAG	MKTKKIIGSLPNMEIPQLPVSLLSHMEAMGLLPKSHEDDGVNDIELPWRSNTNYFRRDVLDERGEPLF
Ga0209645_10079466	F028349	AGGAG	MKVKTYHKNGKAVMFLGYSDIDASNAAKVVMGEVGSVGYFKPRLGTDEDIYDWQYVKEITDEDLKEALGR
Ga0209645_10079467	F020815	AGGAGG	MRLYMNSKGEWVGTQAEAKKIGANMVEVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPNPGTVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIAEKQKETQQ
Ga0209645_10079469	F087896	AGGAG	MNYKTSKGVELSEDGYTKVVKQVNLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIITSITEEK