Scaffold Ga0209645_1004666

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1004666
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6062
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F025414	Metagenome	202	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100466613	F057769	AGGAG	MIKLGSIVTNVGFIQGRNNSNHGLVVDLLADGKIARVFWASTKKTGFCSVSDLMVMYANR
Ga0209645_100466614	F025414	N/A	MQIGSLVRETLDGNIGIIVAWQNDGWLVNFPKHGMVFHMLPRLLEVVDNSPDISLTN
Ga0209645_10046664	F012507	GAGG	MTFSSSQTWTDRLQIGDLVFAVRDGKPGIVLDKEEMAQAKYGDIANKRWRFRLHIDGEQGWLDEVRMRTGYRIP
Ga0209645_10046667	F014672	GAGG	VSRFKPGDLVKVKDGTHQDGMPAHRVGMVIEEGETSKSYSKAYTIIFLGTDLHLKFHETFLEPFTTR
Ga0209645_10046668	F009562	AGGAG	MLAIPLIRTDTGDSLTPIERTTLACEQVITALMMQGTLNDPTVTDQEREAYTTLSVATIIPAEA