Scaffold Ga0209645_1004201

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1004201
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6445
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037985	Metagenome	167	N
F042011	Metagenome	159	Y
F057750	Metagenome / Metatranscriptome	136	N
F061354	Metagenome	132	Y
F103919	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100420110	F037985	AGG	MIACIYPIAYVLGWPLLYGILPSYSSYYILGGMYFTLATSMMAWAMWLHRDIKWSVPAYALVGVALFDCVDYWMLHNILAIIFFVSSTYLMRTDKRFDWLGDISVTWYILLVMPGGVFWFEAIQAVLISWFHLSYVRRLWRVRRL
Ga0209645_100420111	F061354	GAGG	MKVMLWVTQTNVELLEKGEIIQYWLREPANALDVVQVQISYDEFIRLRDNQPEHYVTRDHMRFVNYSGMHRDYMDEGYGVED
Ga0209645_10042013	F103919	N/A	MKHIFGDPVGEIESIIDEMRNIVYIEGVGRCRVVTINRRNENGVNEPYDVYEPVKENK
Ga0209645_10042016	F057750	N/A	MTKENYLFQGTREKAVREAQAEVDQYVPGKVKVYCEWCEDTHAWHMIGAYQSYIDLGERKTPTYVTSFKREKMDRYYDARVFAAFFKQRTAYMNANYYWQLKARENNIHPAMFKEWFDSKKRTSSDMITY
Ga0209645_10042017	F042011	GAG	MKRKQQYETSARIAMIALIAIVVSLTISIAIGKSTVIEEAIPPTAMQEYTYEWYPTPLEQRKMDSLYRIDAVTKADMDSIKDLIDAILIKLE