Scaffold Ga0209645_1004037

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1004037
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6593
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F028358	Metagenome / Metatranscriptome	192	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10040377	F092017	AGGAG	MGILLMIKEGRTLAIESIATPQEPIEPSAPIVDPNDNANDGWFGTGAFAQAAFAAELVEEGAA
Ga0209645_10040378	F003693	AGGA	MIQSKLALIDVSADNNDSLGVEAEGMLLCGIQFPAAMTGTAITFDFSLDNSTWVDVKETDGTEVSYTVSAGDVLRVDPSGWAFASNGYIRVSSNGTEAADRKIILHFRHS
Ga0209645_10040379	F028358	N/A	NHAPMKQPVLCVSPQQLLDLNNELVKGTVDIAGAIIPRDRNVAGIDIDTVITPFGSIGLMVIDPDIMPTGTAFILDLAYIQPVFTNIPGFGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVA