Scaffold Ga0209645_1003458

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1003458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7194
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032640	Metagenome	179	Y
F073494	Metagenome	120	Y
F074857	Metagenome	119	Y
F087434	Metagenome	110	N
F103174	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100345810	F074857	AGGAG	MNVPTNYRPKRLSFRAIAEQAQKLSEMAYLEACQPKELQNQVLMDHCYKQAKLLTNRLVNAGYWQKSKVSLG
Ga0209645_100345811	F032640	GAGG	MRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIAEFDPYVNEIIVKDGGYQTVTTKSRINALLYGWAKGNPSISQRKWVWHLDTVCPLTKDRKSQEFQGVARFPLKVWR
Ga0209645_100345812	F087434	GAGG	MEHKGMKYMEAHKRWISQAKELIPQVPDFKGDFVKSLNERIDSGIPLTPKQFKSLKKVVWYLKKQTEKS
Ga0209645_100345816	F073494	AGG	MVSDKVWESNEISMWVNNDESLHQLARSSWDAWHFFKTLEMIGVYELGGIKLTPQNVKESWEDAND
Ga0209645_10034587	F103174	GAGG	MFMNLKIKPKVGDLVRVNDPYFDDDTCGYCIESEEKFFTLRYFDDASRQYDFEYWYEEDYDLEMSIISST