NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209645_1002887

Scaffold Ga0209645_1002887


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1002887 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8015
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F011190Metagenome / Metatranscriptome294Y
F051547Metagenome144N
F060433Metagenome133Y
F071758Metagenome / Metatranscriptome122Y
F096226Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100288712F011190GAGMIRNFINGLKKSFSGKDYLREINQCNKCGKPSFFDSCLKCETDEAYRGWNKKNLEERD
Ga0209645_100288717F096226AGGAMALSRKDLESIICIACGRKYGEHYKGKGTKFNLPELMSCMFRIQGTLVADGINNSDKQDYKPPSPADTELSS
Ga0209645_10028872F051547GGAMIDPLLIATISVIGGAILNTVRGFLGSSESTYDIKKFFGAIIVAVFAGIAVAQTLALAGLGTIELVLLGLTVGFSVDYAVSKAKK
Ga0209645_10028873F060433N/AMEMSSIIEALLIAAILGMGGALYGFFKKMSSTQADLCETVSRLQKTLIILAKAVDRQSNRLHPETANSDLDDLVKELLDK
Ga0209645_10028874F071758N/AMSDHDCKKCKIPKYGYTDGTHSIYLCYKCGRYEGISGGDEDFVNDINENPMILLHMIKSKMLIPIS
Ga0209645_10028877F001235N/ALPEKLETNENANDMTKKLWEKHQSDEFTAVNEYKEGVCLGCMKVDRAVATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNSYKFNIEQINGRFCSTCHRRIANITKEYNKKGGFMKVDPFWIKMRKKHGKDWKNIMSGNNRSNRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.