Scaffold Ga0209645_1002241

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1002241
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9298
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100224110	F044429	AGGAG	MSELPPKEDRMPGCEWVLVIKYGDPHTNIPQTTGFGPFPTKEDADSFRAQYYYDQIVIAEIVPLNAVLPKSATELDIDFIPEGKVVNIRSKINPNQH
Ga0209645_100224114	F057324	AGG	MNIKNKNIINDDLVKDWLDKFDGNCEISLLSEIANNNICVSGMVDSILAYHVGEVEIAEDFYKRMWRSQS
Ga0209645_10022417	F020533	AGGA	MQDAIMLDQEELVAEFERKVRDKKVFFEVINPGQPESKGVDIQAMLEENNKLKLDLEIFKDIVQKSITSDARRGFNGQDLG
Ga0209645_10022419	F031662	AGGAG	MDFKIEKNIPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKENGTMYRIWRIA