Scaffold Ga0209645

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1002040 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025151 Open in IMG/M

Scaffold ID

Ga0209645_1002040 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9795
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (22.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9795

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (22.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005132	Metagenome / Metatranscriptome	411	Y
F016593	Metagenome / Metatranscriptome	246	Y
F063074	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10020401	F004461	N/A	VPIFDASLTFGNDLCVFDSQSTASVGEKEMTVETYKWAFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTEITTELAADADVLDYDTNATISSSNILDLMEGAYGTMSDVMLAAVYGDADRDFKPSYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPNYYGMEVIHMASLPANEFVISAPQNIVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0209645_100204011	F016593	GGA	MKRLKVGVVNTLSFVKLGDFTTNSFDVTLEKVVGSDSLTITNLTDLNNLDSCKDFIRINIDLVSNDLNGGEYLLTLTNNGKSYTFITEVEDYTITQSGSGIYADTVRFTDL
Ga0209645_100204013	F005132	N/A	MVDVIFIDDNYLYKNFPLPKRMDRSALLSIIQLEQFTSIQDLLGTCLYERIEEHVKDQKLSTSEEGLFKLVKYTLAMYSAKAAISILRTEAARTKNEEAKQDQYILDTLSSTIDSKLSYINKRITNYILDNPILKAVATADGCNNDLFNEEDTYQGSVFYPKNGITDTTCEDGGVTYDL
Ga0209645_10020402	F063074	N/A	MACTVTLADIAYSCDDLGIGGILELHIANRSDADTALTYDTADRLVSAATAVTGVVELSFSNKDGFSVFSEVKTVNADGTTTTVPTISVELPKMDATKITALNDIAKGGAELVAFVKTAAGTYHVSGLDYGLYASTVDGNSGTGRGEKNRFQLTLTGEENGLSYSIAEADFATATA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209645_1002040

Overview

Ecosystem & Geography

Associated Families

Sequences