Scaffold Ga0209645_1002017

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1002017
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9866
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030552	Metagenome	185	Y
F093999	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10020175	F093999	N/A	MRKHHNKLYYGKYRYKTVFKMPGSLIFYPTTNEHLMHVKKIHPDLPDINFLADFIMRYRNKMKFRFQDRRSIFYSDKSLAKKLVEQFWEFWIGSETVDPKYQTLDKNTVGCTRLPHGKYKYQIYIKKDAHLHITNTQRANLCNFIERNADNCLVPGYALLDYLEDRCPYCFGGYFYVTEQQFITPIYMMAQEAIDKVIQFRKVKNGSDKKTTR
Ga0209645_10020177	F030552	AGG	MGHGKKIKRPKETKAWRILNGTYKKPIGREDVEWLIAGIQQECYWTDRDVETFDAINSGKIDWSGDVRSKRRTRKHIRERSKRG