Scaffold Ga0209645_1001853

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1001853
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10348
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100185313	F006383	GGAGG	MLVKDKMWKVQQPGTILRARHSARRGQLALVLARAKSGPRPSNGYPATEYVKMQMISTGERIEESLTNANNCWDIVSEP
Ga0209645_100185315	F069451	AGGCGG	MNSGDLVRIRKTAIDEYSTNWFIYLAEKKAPLLLMEKINNHHWKVMRPDGSTCFLSERKLTKRLW
Ga0209645_100185317	F006867	AGGAG	MLQDKELKELHNSIQKRCRIQPGMLVKSSHEDVAGKLALVVKVSPACTFDRDYEGAEEHIFYVCEPFDGTPSFVDYVCNLEQVS