Scaffold Ga0209645_1001279

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1001279
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12675
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100127912	F022423	AGAAG	MQDLEFIAKTIHTMTENVANTETVHKIMGLANDYARTMKFPKQKTDWTDEQLTKYFNMIEKLIDMPVEYSDIDFEGMDIQEKLKAVGLDSTEITPGLQDSSGIVGEVVNKMAEQAKYRKDLKCPYCKSMVYDNRNSKKSDKSPDFTCSSNDPVVCGGHTGKWRKSWWLDNSDIPEEWGV
Ga0209645_100127914	F040134	GAG	MTINNVKPKWKLTGIEYSGLGNRPCFILINDEGDVKLLPLEKGIHNLRYLLGLENE
Ga0209645_100127916	F010091	GGA	MLDEAENGKRTAILSRITDEAKPFWDGLEDRVKAGRPVKPFVVSRLLKEHYNIKISETAVRHHFQNIVDANVQEN
Ga0209645_10012796	F014085	N/A	VDSLSELREEAMQRANGRCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKRESTRF
Ga0209645_10012798	F025614	AGGAG	MANKPFDVNNVNIFTHPKYMKVWAQQFNKACGSDTFNIGPDMKKLRFLMDKFVIDYNYHLDQLEGEEE