Scaffold Ga0209645_1001126

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1001126
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13557
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F020445	Metagenome / Metatranscriptome	224	N
F046315	Metagenome	151	Y
F058519	Metagenome	135	N
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10011261	F004629	AGGA	MIPTKLTVDQLDNYFQTATYVERYMPSPLNMKNKRTEMFMVIDKLYGIGKDKDSYKNEDKPKIKIRLNGEQIQIYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFMPVSHEQVRIKYY
Ga0209645_100112611	F020445	AGGA	MSDYDNSAALWKRQPRETDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEEQPF
Ga0209645_100112614	F016879	N/A	MSVFKESFFEASFKTIEEFDNAEVASAKLNVSEDANLEIIDIKLNKSLIKTNNDKEHENATEQHSKTVPETK
Ga0209645_100112617	F017558	N/A	MYFIIFKNKNNILTSYSNQIFSTEAEAIDYGNRSLKRKDVWQVVRYNSENYDKYWYKT
Ga0209645_10011262	F011253	GAGG	LNKKLEIDKIIKNFAKNKSLPYSAAITKIKKDRKGYFQAKDIKQQQKSLSTDRFQQYLKDIQENDTD
Ga0209645_10011264	F004990	N/A	MELDDFYDIKKPCCICKKGADLRENNKYYCCDHYALYVLGKPMSQIEKELEE
Ga0209645_10011265	F008915	N/A	MGFIVDNEVTLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVATAKFLDCSKFEYHCNVGGVPDLIFKDLKLQVRTQLPKDNKKNSLIIRPKAKPNEFYILVIDEAPKFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPEKLTPIELLKNGTWN
Ga0209645_10011266	F059875	N/A	MKVFVLIFGVITNNGQIDFVKVPNTELKNIDSCEKAIEINRKWVDNPDFDNNPLPHGFYTYKNRVIMLQYCTENGVYSG
Ga0209645_10011267	F046315	N/A	MNNLMNKKFMEYSVNSSYNSEFVESYMKKNDLLPKEFRFRRTALDLLLKQSNKKISDFVKDTYKPSEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGDMVQIECIGTLFGNGQIGMHKKNERHKINIHPKYASFNAIECLVESKRGLMMLFKPTKSIDRTANNRTVICQDKKTKVHWFGFLEPNSNGKFDVVDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPTIYNT
Ga0209645_10011268	F058519	N/A	MANHLKIIGEAYEKFNDTNTSVSANKEPDPYRAMKRYFLSSEQKDQCKNASLVLGGIAHDINEKSIVENISIDEAIADKKIQQKINSYVSIDMKDQMKFEFGIKFLKDICENHNKNIKELPDKKWKKEIEHIKWIEPVNVPFRMYVDLTGDTYINDLKNKFPSVKLSPLKTKQTKENPNRIGDWVCSHPKLDARVFTSDLMQIALYSHTTGLKPSLSYASATDRILFTEDNCEELRPENLKRSLQELIVYEIAWEKKLKAANGSIEELLWLCPPDFSELRKGSFWWNGVPKKFMEDYLKTYV
Ga0209645_10011269	F006892	GGAGG	MSDMGIIKPLRERVRDLEEINLAHQKKNGQLRQEIQDKDKLIKELEEQIKNPTKKMREQGQL