Scaffold Ga0209645

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1001069 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025151 Open in IMG/M

Scaffold ID

Ga0209645_1001069 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13882
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13882

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F042879	Metagenome	157	Y
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100106920	F010211	N/A	MAGSVRYNAPCASERMPQKSNWSDLLVNVVGHDPPADSLELRNSFIENCLADQDGNKVSQADIHLTMQKGIYDWEQEALSKNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFMSDMYRYWCREHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK
Ga0209645_100106922	F060872	N/A	MREPDKTWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTKKAYKHFDGYNHYPDGNLTATDYDDGYPVWLCADFNRSPHCWALLQVKKARNGLRQYVVFDEIFSKEALTTEQALKAVELLKKWGISRVLLSGDNTSNQKSGNYGRVGKNDWDYVREVFDEHQISYKNELDIQNPRRKVRVDKVNNVIYAGINGERRLLINTRCDHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGSNAPMYVLR
Ga0209645_100106926	F088821	GGA	MIDSSKLYSVPKDVVEDIVMKESRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIAQSTIESNDEYKERLARMKLFPLEQKFFSAQQRIYDENNVNRSYPQNKDFWMYKESNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGEGNPVTDKDGNVVPYNFVVRPHEIWNFEVKQGILTLLVTRQMYYDIYNVKKHKWTAYTPEYICVYTEENGIKKKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYSLKGMYLAASELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQQIPNNMLYQADMQGLQHLRDVIFGDLMSLIFLMAQVRDKSIVKSNVSGSSKRFDNVDEQGLLASTAMDMEMVEMQVLKRMAKVRDEDPTDYHVTYSKHYDLSSAAEIFSDITEGMQYHVLPLPLLKKLTGEYMRKRSMPQEDIQLVMDHFDEFGIPRTSGDLKNLIDILPQEELQRQAELGIDLNSEQ
Ga0209645_10010693	F042879	AGGAG	MSAKAKGRRTIVKAIEFFKDKGMIVDEVELGGRFRKSKDLFSGLCTKCWKHNCEHILEDTFDGFDLVAMDGTNVWLVQVKTNKPPTQKSYKRFAKRFSGKYIRVLAMTWYDRKGWVLHTFNKNGTVTKNDLRHKPNEKKNERK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209645_1001069

Overview

Ecosystem & Geography

Associated Families

Sequences