Scaffold Ga0209645_1001061

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1001061
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13932
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100106122	F052566	GAG	MLDKYVYKRKDGGETWCYGTIKWDSNFEVVCQNEYNDGVWTGDLEFDPVKEGWEGVCKYLEEYYDPQIEQLQTC
Ga0209645_100106124	F050370	AGGA	MAYIHEIYFPCNVGRKTFEDAKALLTNIHGGCTAYNGVGHWQNEGENTDGTKNYVQMREEVWIIRVVSEDATFSGLNLIEEQLFKANEKCVMSTSQEIAVRFNYNN
Ga0209645_100106132	F077246	AGG	MDKLSRNELVVTPVSWDDIQDYIETFEHQAYVTVLAMMVYNYTLKQFSELSGYSFSEWKQEYLKNVNSNQN
Ga0209645_100106133	F091977	AGGA	MTLTEKKIQRMVDNYQFMQSCFKVSNKTPAEQMTQLYHFLRDQMEDVERIDRQEAINRRHQLNGKGYSGKAGH