Scaffold Ga0209645

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1000805 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025151 Open in IMG/M

Scaffold ID

Ga0209645_1000805 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16032
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16032

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002602	Metagenome / Metatranscriptome	544	Y
F016994	Metagenome / Metatranscriptome	243	N
F020386	Metagenome / Metatranscriptome	224	Y
F022908	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100080517	F016994	AGGAGG	MAISENNTTFVAGTQSFLGKELEFITIDAGEELANHLLKNETANAIENTVRQYGNIVGSGPLFDTNASRTYIVEGTDMFVGAPASAGGAFTFTESGADGSSVGTLTAALKALGTVDGIDLNDSGTTAKIENLEI
Ga0209645_100080518	F020386	AGGAG	MPISRNNFTSLPVAAEQEGVDVSFFTVDFINAMNSETGDPQADSTAAGLALVQAAIMDLGINILATGPLGNSNTELTYMVRTDSLDVANHITGNVIRDAIRAVDTNGRAAGATPRNTANFSAATVTAKDVYIAV
Ga0209645_100080520	F022908	GAG	MPTHLDEAIKVILGPDSKLRDKTPRIYAMPKQEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYHPEIILQEPPFDKHEDQSEIFTLIRKPDERWWSGIKDMFYFLPWYTWWTNEKIMAQWPHFTRSTLRLHDVMDEVKPQYLIKCDDGLNDRVIKFAKEHGLLCYGNIPHEKALRHTKPDIKKLEDNGVRELRAWLRKNPDRQKELDEYLEPDWQYWEQVEYQD
Ga0209645_10008053	F002602	AGG	MSNADQIKALVVAVEEKDKHIRLLLGQQGNYEVQIAEYRQIVKELSDKLKLYEKKYGTVFRPTRSTSNRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209645_1000805

Overview

Ecosystem & Geography

Associated Families

Sequences