Scaffold Ga0209645

Basic Information
Taxon OID	3300025151 Open in IMG/M
Scaffold ID	Ga0209645_1000728 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025151 Open in IMG/M

Scaffold ID

Ga0209645_1000728 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16858
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16858

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025852	Metagenome / Metatranscriptome	200	Y
F028316	Metagenome / Metatranscriptome	192	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100072814	F028316	N/A	MANRNFDNLLKSSISAVESVEERSQQELSAVNDYLSEYLKSFVLLGYDTTGESVVIIGGKTAQDYDAIETLLRRVSNIDFFNNIQEPKDKTNE
Ga0209645_100072815	F035326	N/A	MKNKVTTCGYFLKRLRDNGYIANRIFTDYPASDARRWTIMIDPKFAALYITCYTNKDWYGEIMFELHNGNQFKNLQLKTDSMEVIITKLLEKNISPSEQTNG
Ga0209645_100072827	F025852	N/A	MDIVTYVDSIGRTCFGELVARTDETLKVKAPAMIMVTPNDAANMKVDVMPLFFTEFSDGEHPVFEYRQSQIINVEVKISDKILEHYNAKINTKEEPNPEPVKEEEVTLFEDH
Ga0209645_10007284	F072246	N/A	MINKQDHSKLARWMCLYEAVNIISEKAEKMGYEKECLKPIPIGKYIAERFPSVLKDIEIEYENASVAERQ
Ga0209645_10007286	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKARHVRPTTKTLADIAKVSPETYNQVKTDLKPFPGDHVVEQLGRAFKNVSDATYLLNQLFENPTVKTDDETKKSVNFKLQKIQEMIKSITDDLDHDGTNNS
Ga0209645_10007287	F033590	N/A	MGKFKNKFLSLLKEDEEVPAVDATPGDDRESLANTLDDPATAGDLEDVQDTQPNTARELELLQDWTSNIDEILQYLNGGTDSVLGVLRTDNKIGTIFDGISDATKSEVLDVCERLASLNQIFKNLYLEKHK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209645_1000728

Overview

Ecosystem & Geography

Associated Families

Sequences