Scaffold Ga0209645_1000607

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000607
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18488
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F014669	Metagenome / Metatranscriptome	261	Y
F016595	Metagenome	246	Y
F032860	Metagenome	179	Y
F063691	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100060711	F032860	GGAG	MRRQHLTKMSTLLETLEIVSKNAKNKGHRSGHRCHELAKQLADQFDVFVPTLDSIITNKENKNNPTLIKGNQPMTKGEFSIYQVIRKNDYIKVIDVYASADIKMSIYTVRQYVHCLKQKGYIQSVNVKGKHYKLYKAYPLNFNTMDRNLVNKLTS
Ga0209645_100060715	F063691	GGAGG	MPSEIYQCFRCKSVLHEYELMKTEDGKDCPFCCSDNLVNVDDLPEDRGDR
Ga0209645_100060721	F014669	AGGA	MMEEIRTDITQRTYDKHHVLWAKLSAVRLGLVDKEQVKLGNQRDYLTWMPICVAKSRKLLKHNFQLDKLAQMYTVNTKQYRDATNK
Ga0209645_10006076	F002077	GAG	VTNLLPKTKSSREISPQQEQFLTNLFENGGNVTDAALAAGYSKGSVTWLKNSLADEIINRTKNVLSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVVIDG
Ga0209645_10006079	F016595	AGG	MAYFFKCNICNYKETFGITKLFEEIFEGKMQDYESVICNSCATKQKKLKGNQIIIQKGTNNANI