Scaffold Ga0209645_1000567

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000567
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18941
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011848	Metagenome / Metatranscriptome	286	Y
F070146	Metagenome / Metatranscriptome	123	N
F087182	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100056718	F070146	AGGAG	MLQYRILGMQKEPTGLLKGHEIFDFQYRTRDAEAFEKGKELVEKFVADLDFVPADNEYYVIDDPMQITLGEFEDTGKFPGMNSLVLQLEKLGFFTKAVSYRTAEYRPEFARAFNRAVSDEGNTNRDGSIDWNFVDADLYGSEHRPNSDKEYYKLYESLAIQYDLANGIIQ
Ga0209645_100056721	F087182	GAG	LVCKVWQTICRNFKSSSLINSTVGQYTDKINAIAEDFATIDYYEKISALEARDGMMILHYYHGGKKIEFNRDSEYEGTVGKAGEVIELPPFDKDYIRLKEKYESETWGDQIGKWWKKITNLKYNPGKWS
Ga0209645_10005675	F011848	AGG	MSNKTPYEIRLDLVREAREILQAKAKNPEDMPTTEDVLAEAERLNEFVSKKPFSDRN