Scaffold Ga0209645_1000548

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000548
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19289
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100054817	F022423	AGAAG	MPDLEFIARTIHTMTESVENKETLHKIMGTANEYAKTMKFPKSKTEWSDEQLNKYFNMIEKLVDMPTEYTQAEFDSLSLEDKLKAAGLEATDKTEGLQQPGGLVGEVVKEMQQQNRYRDDLKCPYCKAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNSDIPEEWGV
Ga0209645_100054821	F025614	AGGAG	LNKDNINNINIFTHHKYLKVWATQFSKACGSDTFNVPPDTKKLRFLMDKFVMDYNWHLEQLGEEE
Ga0209645_100054824	F014085	N/A	MTGLSEIREEAMQRAGGRCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGFLKRNFE
Ga0209645_100054830	F023355	AGGAG	MALPGAYVVNSPKPGEYCNNCVHYSNNYCIKFNEEVAPYGWCKVWQGYEI