Scaffold Ga0209645_1000516

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000516
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19779
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008026	Metagenome	340	Y
F015100	Metagenome / Metatranscriptome	257	N
F057745	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100051611	F008026	AGGAGG	MMGRNQGAKKYLITSKKALKLLGFKSQTSLDQFHEDEGLTCYIIDGGTGRGGRGFAWDKREINKWLRTEGRNSEEWLID
Ga0209645_100051613	F015100	GGA	MPISDGKGRKDNAVREETNPFLEHTSGYESVGASKREERNAEGGDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYKEEETWVEVSVND
Ga0209645_100051618	F002390	AGGAG	MKHASQLFPIALQELLEIGEKARKQREQRERAGQASKASFTRACMHAACKEKQLKLELQTRI
Ga0209645_100051621	F057745	AGGGGG	MRVTAKLLDDKIHTLNVLLGRPLTPYKEDKSGKLIKGVHGQCIPCPNHFMLDSSYGGFRLDVMAKGGGVNVILDRCTKRELFDQINAMIKGYQIGIA