Scaffold Ga0209645_1000486

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000486
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20346
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019755	Metagenome / Metatranscriptome	228	Y
F028822	Metagenome / Metatranscriptome	190	Y
F063170	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10004861	F063170	N/A	MKKAKKNTKKVDVFAMMVKHMNEKTPVKQNSGRGIVTDSTVARIQDIYKGDKKENE
Ga0209645_100048611	F028822	AGGAGG	MPVFTNKKHTSKLYKVVSDSLKSDPMINKGSNKKQSSTYMMGDRKFDPMLKMSSNQGLAVKGTIDKMIMKAIK
Ga0209645_100048612	F019755	N/A	MAKKFSLNDSNDGSVVKTNLIYDDAEKKMHIENYQDSASIKEILDANKLAQNEGAYKSKVMQNEKGYRVARLPNIVVHQLAKQGILTYAGKVLDKPRFFKWLNDSDNRHFRIYTGNL