Scaffold Ga0209645_1000406

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000406
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22477
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065691	Metagenome	127	Y
F070649	Metagenome	123	N
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10004065	F089518	AGG	VEYVIHIKGKGGECFAYHSTREKSELDRLVKKYLAMKGITVEVKKRMLT
Ga0209645_10004067	F065691	AGAAG	VARRKRIEDIPLNIYIPEPITILLAVLSFLAGFLYRKHNDKEDIADAFDEGFEKGSKDVVKALSELTGRDIHIEMEREDMDR
Ga0209645_10004069	F070649	GAG	MQPKDQPTHIRIKYEPTQKQTQTECRLYGKDFINMAEAARYWGISHSWAVEQIRKGWNTESFPSKARKKYK