Scaffold Ga0209645_1000360

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000360
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24287
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (32.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004358	Metagenome / Metatranscriptome	442	Y
F047358	Metagenome / Metatranscriptome	150	N
F054414	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100036023	F054414	N/A	MNFNSVVKDILEDFRAPTDTKRPTKLSSGKYGTVNPQLNEPHSTKAISGFKGQSGGKIKTLKFKLPKKKVPTKK
Ga0209645_100036029	F047358	GAGG	MNKKYIIIGAVVAAIAYFTMCGKCDAQEVVQEKNWELNTEVGYYEKRISGGLYGAQDSAYVKASTKLGDLQGLALVGSLEYVNTDDYQLHGTVGTYLNTPLGGIDTRLVVHTGEDADTTYELNGAYDLNWFEFVDTSFTVAFEDGSESGTSTDSIVTTPAINVSKTFDVTYADMTVGGEYGQSFGFDEDVEYVHGYVRFTSTINNTLPVFVQVNALKNNLGVVNAISSEGTDGDFDTSVTAGVAFTF
Ga0209645_10003604	F004358	GAG	MFGLITMLLTTLGATGMGSMLKIVGGIFAGISEAKEAKAKRELIRDMQMQKADLEFQKAVFGEMDKDTSAFTRGTRRLIALIGMCNFFVISVLCTLWPSVELITFTPPENKESIKLIWGLVTFPSGADITTAITTGHIALVSIATLGAIIGFYFTPGGKR