Scaffold Ga0209645_1000227

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000227
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30066
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (35.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F052892	Metagenome / Metatranscriptome	142	Y
F090894	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100022728	F052892	N/A	MRPTNSLYIPPTIEYQDKRFNIRRLVRENPDENIEYWKHIIEHDVVLRKDGYLWFLIEISDAEIIE
Ga0209645_100022733	F042580	N/A	MARPKLPEIDKYKKRVRKRYPGSQCVQNHDGEYYIEWNSENLNDIFLLNNTNTELEAWEQASITAKHEQHINRTHPMKKLISQEQKHLNKERITRRIRKYE
Ga0209645_100022734	F047319	N/A	MYKQGETVIVTEHLDKKTKEQKHEVGVIMKSFIHKKQTFYDILLERRSALSFINTSKSSKRHFVNKDLTTKLVESGNIESTIPFKYMLDNEQLPIIIA
Ga0209645_10002274	F090894	N/A	MNLIKLSNILKEISEIESERILSKIRNKNFQFFDSGDNGKVYTIDGEDLLMKITSEPDEVAVADVIVGQYDKYNAFIPVVYTDNKKMYIMKRASKLSPDMYTNIDNFYEGYKDYARQQGVETSIFEYFNNNGARNINQKLASFLSALEQQVKDTGIGDLELSLDFKPDNIMSWNGNLVMVDW