Scaffold Ga0209645_1000088

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000088
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42907
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (29.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003188	Metagenome / Metatranscriptome	502	Y
F041866	Metagenome / Metatranscriptome	159	Y
F057295	Metagenome / Metatranscriptome	136	Y
F059880	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100008844	F041866	AGAAG	MILYQVHHMWYETAMIKECWDSVLAAKKIASAVPIKIKICFNEQTYIEKPHSGKKVEEFFKPHLKHPLLKESDVEVITKTDEDEFYNIADWRREVYEPEAKYTVWGETDTILPRDIFAILNQININQPHVLTLAGRPMWDNSWDVVTHEKLLGYSKPCQCRGEHRKDCIELLEAPFKYKDYINQEELDRFNEESGDIKIQQVPWKLDGSTVCISSNMETPFIAPGMNFVREDTCLEYFLKIKNIPQVCIKTRLKGHNYKHPNKRIGTDATRNDEVFKKYADKSIEAMQNFLKNI
Ga0209645_100008853	F003188	N/A	MKSLKDNIRRVLKSRFDINYRIKQKEPDQETMNKKIFIEVIDQLRKIEDRKDFLAEEIGMDMTAYEDQFFGVIENLFKLVFNKSQLGLIQMYLYQLMPDKEWDGTITVEVGKEEETLPFKSAEDVWNVIKKFSK
Ga0209645_100008863	F059880	AGG	VTKLHFENTHEFEKVFKANDEKVTDAMVEGIQEAFMFHKKSADLFEITFDDADLVYEISLPSTQWELALETCLNHYRDLDQADKAIDTYLLQKNIRKWLS
Ga0209645_100008864	F057295	N/A	MVKLIYLDGEYYQLVRDIKVEQVMGNMEGLKAWRDMLHCDHVLKYQGKYLMVRRVLDAEI