Scaffold Ga0209645_1000020

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1000020
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70759
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (16.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F025852	Metagenome / Metatranscriptome	200	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F046017	Metagenome / Metatranscriptome	152	Y
F056154	Metagenome	138	Y
F072246	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_100002018	F016734	N/A	MDSKQQKQYDAKLDTLGLTESQRDAFDHSAKRSLIDLENYKGDDFSLNGYKLSKVMDDFVLAQFVDLSDDGTAINRNGILIPLAQVQRTWRLARVILAGPNCKSVKVGDVVCFPDDKGVKVSNITVAGFDDPLKDCLFLNEERFFGVCDQLD
Ga0209645_100002027	F046017	N/A	MPKVQEETYTISEIFFNGVQYNPGEKDVEEITFLGTKTLQAKVKENLTIFWNPLTWDWTKSTDKEAYETKYKRKTRAVYFKEKVFLVETAKFKKGIVDDEFVDTAELPIGIVVYWEADTEQWQMLGYKENLLR
Ga0209645_100002048	F056154	N/A	MLRQVRSFYPRKLEFSPEFLEAFKAEYTRLVESGQNKRTLLERMKKALAFHL
Ga0209645_100002065	F025852	N/A	MDIITYVDSIGRTCFGELVEETSDFVKVKAPAMIMVTPNDPSNMKVDVMPLFFTEFSNGELPIFNYKTTQIVKVDVDISDKILVHYEAKINVKQEPNPEPVPETLEEEVPEIALFEESK
Ga0209645_100002077	F035326	N/A	MKNKVTTCGYFIKRLRDNGYTVNRIFDNYCPSDPRRWTIMVDPENCALFITCYMNKDWYGDLMFEFNNGQQFKNFQLKTDSMEVIITKLIEKNINP
Ga0209645_100002085	F033590	N/A	MGKFENRFLSLLKEDEDVPAIDAGPSDDADSFAGSLDEPSNAGDFEDVQDTQPNTGRELEMLKEWIDNLDEVINYLNGGTESVLGVLRTDNKTGTIFDDVSDATKSEILDVCERLASLNQIFKNLHIEKHK
Ga0209645_100002086	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLSDIAKASPETYNKVKADLVPFPGDHVVEQLGTAFKNISDASYLLNQLFENPVVKTNDKTKKSVNNKLQKIQDIIKSITDDLDNDGRDNS
Ga0209645_100002088	F072246	N/A	MTSNQDNSKLARWMCLYEAVNIISEKAEKMGYEKDCLKPIPISKYITERYPSVLKEIEYEQTNNSLHTHHH