Scaffold Ga0209725_1034948

Overview

Basic Information

• Taxon OID: 3300025144
• Scaffold ID: Ga0209725_1034948
• Source Dataset Name: Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Indonesia: Gulf of Boni
• Coordinates
  • Lat. (^o): -2.75
  • Long. (^o): 121.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028692	Metagenome / Metatranscriptome	190	Y
F032173	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209725_10349482	F028692	AGGAGG	LPKYSGMMWMLAFVAVFLIATYAVSQLTSLAPRVMHGSASAADLLIGVGYLAVTLVSVLILGRMIYSSERAAGRVRRRVKMFE
Ga0209725_10349483	F032173	GGAGG	LSETVKRHSTLISVGWLVLLVVLLIFEVAFLFGVYMSGVAGLERVFGIFTGLVLVTFGVMLYAGRLIFYD