NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1264931

Scaffold Ga0209756_1264931


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1264931 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036924Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_12649312F036924N/ATVHKVDFTASSVASSTAFANETSIVMLCAKTAGCHFHIAPTPTATTDLSYLPKDEIIYVKVAGGDKIAAIREASTSGSLYVTELV

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