Scaffold Ga0209756_1119940

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1119940
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026408	Metagenome / Metatranscriptome	198	Y
F048970	Metagenome	147	Y
F063091	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_11199401	F063091	AGGA	MLYKSLFLLVFANLFNQAYNLEQIQCPKWVPGSDQVLPQGVSLSPELELENRVRCYCEVVKAKEAQCLARHVPATICKARTRIWVENNLKLKEAFQLVKGVSPPPRRDRMISVEP
Ga0209756_11199402	F026408	N/A	MSALIGLSAMLLFSTVNLEMMIAGNTRRIRQAKISATSGLNHFTALRLDYDTLREQAGDLQTLQILPRTRLSPKTSYEVKVHFYPRLSERQYVVESIGYYTKGDKVISVHPTKALFEGGQ
Ga0209756_11199404	F048970	AGGA	MKIKKKKLKEFVRGVVKEAAKDGAIQKIYRRSFKNMIDKASMGGNKNTPPFSKKAARPG