Scaffold Ga0209756_1084829

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1084829
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1408
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F003385	Metagenome	490	N
F015325	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10848292	F001039	AGAAG	MIDYNLVLYFGIGLIVFGFVLFLISIHYERQAEIKLFKLEQLDKAFRKAKENERL
Ga0209756_10848293	F015325	AGAAGG	MTNKKWLVIERTNYGENNDSFSISKIADTIEQATKFQIHLDALNDRTNRTYFIASDIGTVMNRVISLHNKSVEEKPLILKDEVKETSSEEMPF
Ga0209756_10848294	F003385	AGG	MKDENGKYTQHLKAVDLEKIPENFVITYYANKHKKIITRNGQWTKPDDFMTTGKAFISKNGVVCFIYWDCDAEPDEKGNQWRMAKNPMTIKATQTIEG