Scaffold Ga0209756_1048762

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1048762
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2087
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10487621	F009562	AGGAG	MLAIPLIRTDDDTNVTPIERTALACEQVITAMMMQATLDDPAVSEAEREVFTTLSVATIIPAEA
Ga0209756_10487624	F008590	GAGG	MQVGDLVTYHFQLSRWRKGESVSLGLIVETGKYTANRDVKVLWTDQPEPETEASQHLALVDNLLTT
Ga0209756_10487626	F057769	AGGAG	MNIEIGSIVTNVGFIQGYNNSNHGLVISLMADGKIARVFWASTQKSGFCSVSDLKVVA