Scaffold Ga0209756_1039235

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1039235
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2434
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F026439	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10392351	F014672	N/A	QALLVEKFKPGDLVRIKDGTHQDGMPDHRVGMIVELGETSKSYTKAYTVVFLGTDVHLKFHEMFLEHFTSS
Ga0209756_10392352	F009562	AGGAG	MVTIPLIRTETDANVTPIERTALACEQVITAMMMQATLDDPAVTDQEREVFTTLSVATIIPAEA
Ga0209756_10392354	F008590	GAGG	MQIGDLVTYHFQLPRWRKGESVSVGLVVETGKYTANRDVKVLWNDKKEPETEASQHLTLVDNLLTT
Ga0209756_10392356	F026439	AGGAG	MASQLDHVMTFEQATDSFVNMILPMIQDDEQRLGHVDIVARSEAWSNYVDSLHDCEMISDWQIDNWEHPPCCD