Scaffold Ga0209756_1037468

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1037468
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012400	Metagenome	281	Y
F041753	Metagenome / Metatranscriptome	159	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_103746810	F041753	AGGAG	MTNYQVHFEYVRSGKAWVQRGMRTIKARNEAEAIIKAKSVVEGSFGHWVNRLANEVA
Ga0209756_10374685	F012400	AGGAG	MKQKYSIKKFMGDDIYSWAVFRAEDVKGMRSPICDPWIQPVINGLGRSEAQYHKKCLEEK
Ga0209756_10374689	F080510	AGGTGG	MSWIQEDGLRRNKQGILLRKNQDRAPDIKVGDRFFDCANGRWATLLRIRPMEEALGAPFEALYDGCDRFAPFIGVAMHCDIGDVS