NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1037468

Scaffold Ga0209756_1037468


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1037468 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2514
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012400Metagenome281Y
F041753Metagenome / Metatranscriptome159Y
F080510Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_103746810F041753AGGAGMTNYQVHFEYVRSGKAWVQRGMRTIKARNEAEAIIKAKSVVEGSFGHWVNRLANEVA
Ga0209756_10374685F012400AGGAGMKQKYSIKKFMGDDIYSWAVFRAEDVKGMRSPICDPWIQPVINGLGRSEAQYHKKCLEEK
Ga0209756_10374689F080510AGGTGGMSWIQEDGLRRNKQGILLRKNQDRAPDIKVGDRFFDCANGRWATLLRIRPMEEALGAPFEALYDGCDRFAPFIGVAMHCDIGDVS

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