NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1034665

Scaffold Ga0209756_1034665


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1034665 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2653
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F021674Metagenome218Y
F022282Metagenome215Y
F069451Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_103466512F069451GGAGVKPGDLVRIRKTAIDAYSTLWFIDLADRKAPLLLMEKLNKQHWKVMKPDGTDCFISENKLTTRMW
Ga0209756_103466513F021674GAGGMERETYNTRLKSNPENIPVGSLLRVKKHCRKNVTIRQNGEYGLLATTINNGKYITHDVLFPNGTRCIYMPLNWEVVSYAVR
Ga0209756_10346654F022282GGAVNPSFRYQLGDLVEFKRTARVTEEYIDVEKVSGIVVEQRYVFTADNQFKVRTPDKDYWIRSDHLTLLSSATK
Ga0209756_10346659F006867AGGAGMLYGKELVESIQKRSRIQPGMLVNSINPGNGIKKLALVVELSPGCKFDRDYQEAEEHIFYRCEPFDGTPAFVDYVCNMEQVS

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