Scaffold Ga0209756_1034665

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1034665
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2653
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_103466512	F069451	GGAG	VKPGDLVRIRKTAIDAYSTLWFIDLADRKAPLLLMEKLNKQHWKVMKPDGTDCFISENKLTTRMW
Ga0209756_103466513	F021674	GAGG	MERETYNTRLKSNPENIPVGSLLRVKKHCRKNVTIRQNGEYGLLATTINNGKYITHDVLFPNGTRCIYMPLNWEVVSYAVR
Ga0209756_10346654	F022282	GGA	VNPSFRYQLGDLVEFKRTARVTEEYIDVEKVSGIVVEQRYVFTADNQFKVRTPDKDYWIRSDHLTLLSSATK
Ga0209756_10346659	F006867	AGGAG	MLYGKELVESIQKRSRIQPGMLVNSINPGNGIKKLALVVELSPGCKFDRDYQEAEEHIFYRCEPFDGTPAFVDYVCNMEQVS