Scaffold Ga0209756_1022962

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1022962
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3545
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016208	Metagenome	249	Y
F024646	Metagenome / Metatranscriptome	205	Y
F046002	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10229623	F046002	GGGGG	MLKEHDKIFLSKWFSSLFTVWYASIGLYLYDPYILQILYWPLHTHDIEIDVVESTVDWQSYIDKLDVDLEIGYLYPPEINDSEPEIIEEVIKIRKMDRVLEKINE
Ga0209756_10229624	F024646	AGGAG	MTEHQLEQIHNYTKYKVVEILINKHNEGNTLSNLDEVEDVAEDVLTILGLVGAKYYAKGT
Ga0209756_10229629	F016208	GGAG	VSILNKFLSKKNQHTYGLLLRVIGTLMWVYITAPIGAFVVILGEIVTWIDFDD