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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025141 Open in IMG/M |
| Scaffold ID | Ga0209756_1018688 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4100 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 85 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004879 | Metagenome / Metatranscriptome | 420 | Y |
| F043344 | Metagenome / Metatranscriptome | 156 | Y |
| F087046 | Metagenome | 110 | Y |
| F095606 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209756_101868811 | F095606 | GGAG | MKRLREEVKNAGFTYEREDKAVKAIEEIFSLVGSRDFAGLRKLTRTKLGSAMLDLAECYGEFTEGSMADWHWSENRDGEIIRYSRKFDPNQTIIPKDFE |
| Ga0209756_10186883 | F004879 | GAG | MELKLHQREHFEQKIDKLLEPEIEREELKLKTTINKILDKGVDKFGKSIGADKVIARLRKAEEEKRVASRQAYMFFNAKASSIVAYNKAKEYKFDRDDKEKISVDDCISQLEKWAEKQAEQFAETTPQGQRLAFLKALQNSAKDKVKEASVSDELKNTLDNLFKMVGVSWERKLPALPRK |
| Ga0209756_10186886 | F087046 | AGGAG | MSNEYEFKVHNFYDYTLEELKQLKNEFEASVSSFESMYDQAINFKEACVDLDKLSKDDWYKKYVSEDGNHWVEDGSIYGLAKEHYKDKK |
| Ga0209756_10186888 | F043344 | GAG | MGDRVSISFQQTAEWYVNRKKEEHLEQSPALFHHWGGTDFPKFAFQWFKNVKAKYAKHGGDPFTRMEPRNLMVQFIAHLRNHEELRYDTDDQLLSYSIYLGKDSNDGDNSDNGHYLIDVDKGKMYNDKGESIE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |