Scaffold Ga0209756_1018444

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1018444
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4139
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019158	Metagenome	231	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_101844417	F070089	GGAG	VKVGDLVKFESELADDMDRYSVDHGLVIQLSKTGHDTISVQVLFGDGESWWVDSGRLVVVSEAGR
Ga0209756_101844419	F079212	AGGAGG	VSKHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKESEICTECFDFEIINESGKSGEI
Ga0209756_10184442	F105146	GGAGG	VLGRESVKVGSLVKSKYTVSGHRARMGVVIQMREGAFENQPLAQVFWPYKGDTGWVEAKDMEVIDESR
Ga0209756_10184445	F019158	N/A	MTIVIDSEDREGIDAALKVARLMHEKYVSNGTYHKESFGKIEFIKMLRKFMRESIEHLDDPDSNQVKDLNDMGNLRNAKRFADRMFRGER