Scaffold Ga0209756_1016542

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1016542
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4468
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F022428	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10165421	F022428	AGAAGG	MFLALIRGLLIPKAKNITKKAENTFFVMNLIWRVANSEEFGSRYLRQFTTKLHLYSD
Ga0209756_10165428	F003270	N/A	MARKRRRRSSKKRNGSKSIKSMVRQIVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVSPNVMVQNRSQTNRAFATAQRNRSYVPVDSFDSSTGSAFR
Ga0209756_10165429	F008596	GGAG	MSGAWDIASASSLGTGVAQTTINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPVQAGLGTLINIVAPLLEAYECNTGLQEGATSQFTVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTAFTNDITQSATTRFIMGVGYTKQG