Scaffold Ga0209756_1013814

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1013814
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5061
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10138143	F018815	N/A	MNNSLENITDHLKPFLLRDIIIRTDKKVLKRGRLKIFQIKQYYINLSLEYKNSIKNYEIPYPFHIHLEQEGSEAVLNYHLSSFVPKGQINKVKCLDTSSKSKIYNNLVYIWPSEEATL
Ga0209756_10138144	F018622	GAG	LESVKRKMIVQKATLDPLLQTHVCEVRFPRRIEKSGLAPTRRMLCTNSIELLNSVNGRISLNYFAPKGPPKAYLGPDDLTVAWDILVQDYRNINMYQCNLIQEIPANDDFWVYFNENIYPMSAKQKFDFMNS
Ga0209756_10138145	F014794	N/A	MAMASIDNLAPTRSLIDLSKSEKGDFGIDDYELSFIFDDILLIEYVDETQEGEIERNGILIPTNALNKAWRKGRVILAGPDAKYAKEGDVVVFPNNMGVTINGVSITGKGKVKTGVFLNEERMFGICKKKDDSPKSDS