Scaffold Ga0209756_1012234

Overview

Basic Information

• Taxon OID: 3300025141
• Scaffold ID: Ga0209756_1012234
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5533
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_10122343	F062151	AGGAGG	MTSTSYTSADLLESILIDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADVVSEIVRIIKSKIRGGTDYTDLRVIASYTRNQYMRNMFNHIITISMRISESS
Ga0209756_10122346	F031648	N/A	MVEYNHNVKSFNADTTIKGSHGVIVSVYVSKTGSSGSKCVFKNGTTSSGTEEFTIFSEQQGTYVGINRRFEDGIFADITGNAEYTVVFK
Ga0209756_10122347	F001625	N/A	MAVTITTSDWTNANVRKTLSWQAALTSKLRIYKIKVTAGGSDAYATNGVSADLKESRISTLVAVIPEFTDSLYKVEYDKANEKIKLYSVGGSAGAVLAEVANSTSIANKVFEFLVIGY