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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025141 Open in IMG/M |
| Scaffold ID | Ga0209756_1011310 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5826 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 85 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001625 | Metagenome / Metatranscriptome | 661 | Y |
| F005948 | Metagenome / Metatranscriptome | 385 | Y |
| F021393 | Metagenome / Metatranscriptome | 219 | N |
| F062151 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209756_10113102 | F021393 | AGG | MVNEDNSKEQVEDAYVAKSDYVEQRVDTEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPASDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNAALETVDKSIKDTSMILKDARSEGFEGLSTVARNILNGKYYVPSDDEIRGF |
| Ga0209756_10113104 | F001625 | N/A | MALTISTSDWTNGNVRKTLSWQAALTSKLRVYAIKVTFGASDNYATNGVSADLKQGRRVKTLIAVIPTYTDCRQEVVYDKANEKILLYDVGGNAQSKFAEVANDSSTCNSKVFEFLVIGY |
| Ga0209756_10113105 | F005948 | N/A | MVELNHNVVSFNSDTLIKGAHGVLVNVYVSKTGSGSNKVEFRNGTTASAPVEFTIFTAAQGTYVGINRRFEDGIFADCDGSAEVTVVFK |
| Ga0209756_10113108 | F062151 | GAG | MGTAVYDAADTVVSLLKDNWTAGRIPNVQKAWDKRSVGFGDSRSPQIILTPKTENVTYFGLYGSDFWHDVTIDLDIRSYQNDARHNNIVKEVIKIIKAQIRGGTDYTDLRVIASYSRSHYMRNMFNHIVTISLRKLNPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |